Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs62052240 chr16:90025135 C/T 1.26E-8 171 25.77 20.2 6.62 KM Plot
PCPG rs62052249 chr16:90044191 G/C 1.26E-8 171 25.77 20.2 6.62 KM Plot
PCPG rs62052252 chr16:90048379 T/C 1.26E-8 171 25.97 20.17 6.62 KM Plot
PCPG rs62052255 chr16:90054724 A/G 1.11E-8 172 25.87 20.2 6.62 KM Plot
PCPG rs62052660 chr16:89847420 T/A 0.000168 177 25.87 20.2 36.37 KM Plot
PCPG rs62052661 chr16:90151351 G/A 8.74E-9 176 25.87 20.2 6.62 KM Plot
PCPG rs62052710 chr16:89854893 C/T 0.000174 176 25.87 20.28 36.37 KM Plot
PCPG rs62052711 chr16:89855100 C/A 0.000174 176 25.87 20.28 36.37 KM Plot
PCPG rs62052712 chr16:89856913 C/T 0.000159 177 25.87 20.37 36.37 KM Plot
PCPG rs62052714 chr16:89857180 T/C 0.000159 177 25.87 20.37 36.37 KM Plot
PCPG rs62053701 chr16:89860584 G/A 0.000166 176 25.87 21.5 36.37 KM Plot
PCPG rs62053702 chr16:89860688 G/T 0.000166 176 25.87 21.5 36.37 KM Plot
PCPG rs62054224 chr16:89892071 C/T 0.000198 172 26.22 20.28 36.37 KM Plot
PCPG rs62054251 chr16:89892080 A/G 0.000198 172 26.22 20.28 36.37 KM Plot
PCPG rs62054252 chr16:89896834 G/A 0.000207 171 25.87 21.5 36.37 KM Plot